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Recent Publications

  • Read some of the recent publications authored by the faculty and staff of the Center for Cancer Genome Discovery (CCGD).

    MAP2K1 and MAP3K1 mutations in langerhans cell histiocytosis
    Nelson DS, van Halteren A, Quispel WT, van den Bos C, Bovée JV, Patel B, Badalian-Very G, van Hummelen P, Ducar M, Lin L, MacConaill LE, Egeler RM, Rollins BJ. Genes, Chromosomes and Cancer. 2015 Jun;54(6):361-8. doi: 10.1002/gcc.22247.
    PMID:25899310

    Genomic aberrations in cervical adenocarcinomas in Hong Kong Chinese women
    Chung TK, Van Hummelen P, Chan PK, Cheung TH, Yim SF, Yu MY, Ducar MD, Thorner AR, MacConaill LE, Doran G, Pedamallu CS, Ojesina AI, Wong RR, Wang VW, Freeman SS, Lau TS, Kwong J, Chan LK, Fromer M, May T, Worley MJ Jr, Esselen KM, Elias KM, Lawrence M, Getz G, Smith DI, Crum CP, Meyerson M, Berkowitz RS, Wong YF. International Journal of Cancer. 2015 Jan 27. doi: 10.1002/ijc.29456. [Epub ahead of print].
    PMID:25626421

    BreaKmer: detection of structural variation in targeted massively parallel sequencing data using kmers
    Abo RP, Ducar M, Garcia EP, Thorner AR, Rojas-Rudilla V, Lin L, Sholl LM, Hahn WC, Meyerson M, Lindeman NI, Van Hummelen P, MacConaill LE. Nucleic Acids Research. 2015 Feb 18;43(3):e19. doi: 10.1093/nar/gku1211. Epub 2014 Nov 26.
    PMID: 25428359

    Sporadic hemangioblastomas are characterized by cryptic VHL inactivation
    Shankar GM, Taylor-Weiner A, Lelic N, Jones RT, Kim JC, Francis JM, Abedalthagafi M, Borges LF, Coumans JV, Curry WT, Nahed BV, Shin JH, Paek SH, Park SH, Stewart C, Lawrence MS, Cibulskis K, Thorner AR, Van Hummelen P, Stemmer-Rachamimov AO, Batchelor TT, Carter SL, Hoang MP, Santagata S, Louis DN, Barker FG, Meyerson M, Getz G, Brastianos PK, Cahill DP. Acta Neuropathologica Communications. 2014 Dec 24;2:167. doi: 10.1186/s40478-014-0167-x.
    PMID:25589003

    Preexisting oncogenic events impact trastuzumab sensitivity in ERBB2-amplified gastroesophageal adenocarcinoma
    Kim J, Fox C, Peng S, Pusung M, Pectasides E, Matthee E, Hong YS, Do IG, Jang J, Thorner AR, Van Hummelen P, Rustgi AK, Wong KK, Zhou Z, Tang P, Kim KM, Lee J, Bass AJ. Journal of Clinical Investigation. 2014 Dec;124(12):5145-58. doi: 10.1172/JCI75200. Epub 2014 Nov 17.
    PMID:25401468