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Center for Patient Derived Models Services

CPDM hosts and distributes a large, curated Patient-Derived Model Repository spanning brain tumors, hematological malignancies, and solid tumors (including breast, ovarian, pancreatic, colorectal, and more). For projects requiring bespoke systems, our model development team generates patient-derived cell lines (PDCLs) as organoids, spheroids, and 2D cultures, as well as patient-derived xenografts (PDXs), with scalable expansion and secure model banking.

Every model is backed by rigorous characterization — STR authentication, genomics, transcriptomics, and histology — paired with precision oncology research support that includes ex vivo drug testing from fresh patient material or established models, endpoint assays (CTG), phenotypic readouts (Incucyte, Cytation 5), and SMR. We also collaborate on grants and clinical trial support to integrate models, assays, and analytics into study workflows.

Whether you need a model on demand or a customized program, CPDM delivers guidance from intake to data delivery. Explore our services below.

    Cancer models generated from patients before, during, or post-clinical trial are valuable resources to study patients' trial responsiveness and could potentially serve as avatars to predict future treatment responsiveness.

    Our team of clinical research coordinators offers processes for regulatory compliance to generate cancer models from clinical trial patients.

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    Image showing patient-derived model integration in clinical trial treatment plan.

      CPDM supports the characterization of patient derived models using various genomic and molecular approaches. Our standard approaches include:

      • Targeted Cancer Panel (ModelSeq)
      • Lineage Marker Expression NanoString panel (ModelExpress)
      • Low Pass WGS (ModelLP)
      • WES, WGS, RNASeq
      • STR Fingerprinting
      • Histopathology
      • In vitro Cell Viability Assay with PDX/PDCL in our semi-automated IncuCyte S3 live cell imaging platform and Tecan D300e drug dispensing platform
      • In vivo Studies with PDX/PDCL

      Once characterization data is acquired, data will be uploaded to a private instance of cBioPortal for analysis and visualization.

        CPDM has a team of clinical research coordinators supporting clinical data abstraction and data organization in REDCap. Email us at models@dfci.harvard.edu for a sample template of our REDCap database.

        We also offer grant support, and our services and personnel can be incorporated as part of your grant budgeting. Please download our CPDM resources document, and contact us for collaborative grant applications.

          CPDM has a team of in vitro/in vivo technicians, bioinformaticians, and scientists offering a wide range of potential collaborations for specific novel method development around cancer modeling or model characterization, including novel assay development.

          CPDM welcomes partnering with academia and industry collaborators on method and technology evaluation; we can use cancer models and their associated rich clinical annotations to help validate the application of novel technologies prior to deployment.

            CPDM supports the creation of patient derived cell lines (2D, 3D spheroid, or organoid); patient derived xenografts (PDX); as well as acute cell sensitivity to drug models (ACSD) from patient tumors.

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            Examples of some of our models (left to right): Lung adenocarcinoma organoids, glioblastoma spheroids, subrenal capsule PDX of mesothelioma, and ultrasound detection of an atypical teratoid PDX
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            Image of a patient-derived model system.

              Many of our patient derived models are available for both academia and industry users. Here's a snapshot of our cancer model request process:

              • Explore model collection
              • Submit model request
              • CPDM confirms availability of model inventory and usage restriction
              • Initiation of MTA process
              • Payment and model shipment

              Explore Our Models

              Contact the Center for Patient Derived Models

              Email models@dfci.harvard.edu to learn more about our services and request a quote.

              Explore Our Models Submit a Model RequesT